Teaching

Introduction to phylogenetic analysis with Python and R programming

Workshop May 15, 2025 – May 16, 2025

Mongolian National University of Education, Department of Biology Ulaanbaatar, Mongolia 🇲🇳

A hands-on workshop on phylogenetic analysis using Python and R. The pipeline covered MSA with MAFFT, trimming with trimAl, model selection via ModelFinder, and tree inference using IQ-TREE2. Phyloki were used for metadata integration, with final visualizations generated in ggtree.

NGS Data Analysis

Handbook September 01, 2024

Own materials

Detailed guidelines on NGS data analysis. Covers topics on: Quality Control of raw data, Genomic Variation Analysis, Whole Genome and Pangenome Analyses, Phylogenetics and 16S Amplicon Analysis.

Culture-independent methods for qualitative and quantitative microbiological detection and identification

Guest lecture June 12, 2023

BINUS University, Food Technology Department Jakarta, Indonesia 🇮🇩

Lecture for 2nd year undergraduate students who are new to the study of microbiology on «Culture-independent methods for qualitative and quantitative microbiological detection and identification».

Ilia Popov

Teaching

Introduction to phylogenetic analysis with Python and R programming

NGS Data Analysis

Culture-independent methods for qualitative and quantitative microbiological detection and identification