Note
Hands-on workshops, guest lectures, and self-developed materials focused on phylogenetics, NGS data analysis, and computational biology workflows
A hands-on workshop on comparative genomics using Python. The case study centered on Streptomyces albidoflavus SM254 – a soil bacterium with antifungal activity against Pseudogymnoascus destructans, the causative agent of White-Nose Syndrome in bats. Participants worked with precomputed eggNOG-mapper annotations to build and interpret KEGG pathway profiles using KEGGaNOG.
A hands-on workshop on phylogenetic analysis using Python and R. The pipeline covered MSA with MAFFT, trimming with trimAl, model selection via ModelFinder, and tree inference using IQ-TREE2. Phyloki were used for metadata integration, with final visualizations generated in ggtree.
Detailed guidelines on NGS data analysis. Covers topics on: Quality Control of raw data, Genomic Variation Analysis, Whole Genome and Pangenome Analyses, Phylogenetics and 16S Amplicon Analysis.
Lecture for 2nd year undergraduate students who are new to the study of microbiology on «Culture-independent methods for qualitative and quantitative microbiological detection and identification».