Introduction to phylogenetic analysis with Python and R programming

Workshop, Mongolian National University of Education, Department of Biology, 1900

A hands-on workshop on phylogenetic analysis using Python and R. The pipeline covered MSA with MAFFT, trimming with trimAl, model selection via ModelFinder, and tree inference using IQ-TREE2. Phyloki were used for metadata integration, with final visualizations generated in ggtree.

Google Colab — Part I

Google Colab — Part II