Whole genome metagenomic analysis of the gut microbiome of bats
The data analysis of shotgun metagenomic data from bats fecal samples was so complex that there are 4 different parts of it!
See lab journals and some supplementary files in directories:
- 📁
01_QC_n_tax_id- quality control & taxonomic identification step - 📁
02_Diff_analysis- microbial community analysis (relative abundance, differential abundance analysis, α & β diversities assessment) - 📁
03_MAGs- assembling MAGs and analyzing them from quality control to the detailed functional profiling - 📁
04_Densoviruses- analyzing densoviruses (genome annotation, ANI, phylogenomics)
Pipeline:
