Pediatric Nutritional Medicine and Intestinal Microbiology
Research Internship in Indonesia (Bina Nusantara University; Feb 2023 – July 2023)
Portfolio
The shadow of HIV
Bioinformatics Institute Research Project; Feb 2024 – May 2024
SequenceForge-Lite
Lightweight tool designed to work with biological sequence data, providing various functionalities for filtering FASTQ files and manipulating FASTA files
MyAwesomeEDA
Python module that provides a set of tools for exploring and analyzing your dataset
BI: Study Projects
Study projects completed as part of the workshops undertaken during the training at the Bioinformatics Institute:
1. Variant calling of Escherichia coli WGS
2. Variant calling of deep sequencing data (Influenza A virus (H3N2) hemagglutinin gene)
3. De novo assembly of Escherichia coli genome
4. Tardigrade Ramazzottius varieornatus genome annotation and protein function prediction
5. Genotyping and SNP annotation of human 23andMe data
6. RNA-seq data analysis for differential gene expression of Saccharomyces cerevisiae after 30 minutes of fermentation
7. Ancient metagenomes analysis examining human dental calculus
8. Annotation of the immune repertoire derived from the T-cell population in a relatively healthy donor
9. Single-cell CITE-seq analysis detailing the cellular composition and transcriptional profiles within human bone marrow
BI: Phylogenetics
The complete pipeline of simple research in phylogenetics: from working with NCBI (and other databases) to building trees, evaluating them, and getting some worthwhile results
Handbook: NGS Data Analysis
Handbook on conducting NGS data analysis studies. At the moment there are detailed manuals on Quality Control and Variant Calling. Much more to be disclosured soon!
Detailed Sequences for Trees Unblemished
Tool to automatically annotate phylogenetic trees