Overview

This chapter contains a manual on 16S amplicon analysis

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03 Parkinsons disease

In the Parkinson's disease chapter there is an example of "real-life" analysis pipeline with the data from study on Parkinson's disease using U-Test, Generalized Linear Model; NearestBalance & selbal packages and Random Forest Machine Learning algorithm.

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02 Crohns disease

In the Crohn's disease chapter there is an example of "real-life" analysis pipeline with the data from study on Crohn's disease using MicrobeR, balance, NearestBalance & selbal packages.

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01 Introduction

In the Introduction chapter there is an introductory guide on 16S amplicon analysis with DADA2.